Nuno D. Mendes
Index - Publications - Software - Documents

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Research Interests Development of pipelines for the identification of miRNAs and their targets, based on genome sequence analysis and RNA-seq data.
Development of web-based tools to access repositories of biological data. Design and implementation of ontologies to meaningfully represent biological concepts, experimental assays and other meta-data.
Qualitative modelling of gene regulatory networks and exploration of the corresponding dynamics.

Teaching 2014: Genome Sequence Analysis at PhD Program in Molecular Biosciences, ITQB/UNL, Oeiras, Portugal
2011/2012 (Spring semester): Authoring and Information Retrieval at ISEGI-UNL
2006: Introduction to Programming using Python at PhD Program in Computational Biology, IGC, Oeiras, Portugal
2004/2005 (Spring semester): Compilers at IST/UTL, Lisbon, Portugal
2004/2005 (Fall semester): Object-Oriented Programming at IST/UTL, Lisbon, Portugal

Short Curriculum
2017- Senior Software Engineer at Pentaho
2016-2017: Software Engineer and Head of R&D at Findmore
2014-2016: Consultant at Bold International
2014-2014: Head of IT at HeartGenetics
2010-2014: Associate Researcher at the KDBIO group - INESC-ID Lisboa.
2013-2014: Postdoctoral Fellow at the Forest Biotech Lab - iBET
2012-2013: Postdoctoral Fellow at the Network Modelling group - Instituto Gulbenkian de Ciência.
2010-2011: Postdoctoral fellow at the KDBIO group - INESC-ID Lisboa.
2006-2011: Dual PhD from Instituto Superior Técnico and Université Claude Bernard Lyon 1.
 Hosted by the BAOBAB Group at LBBE, France.
2005-2006: Student of the PhD Program in Computational Biology at Instituto Gulbenkian de Ciência.
2005: MSc from Instituto Superior Técnico in Information Systems and Computer Engineering.
2003: BSc from Instituto Superior Técnico in Information Systems and Computer Engineering.


Index - Publications - Software - Documents